Choose an alignment file to upload
  format: fasta msf saved selections phylip nexus clustalw pfam selex mega meme emboss psi Click here for info on alignment formats
If you need to produce an alignment we recommend ClustalW from EBI (N.B: Please select aln wo/numbers for the OUTPUT FORMAT)

OR paste in alignment data

How many groups does your alignment have?
Are you trying to find either a
Protein Motif or a
DNA Primer?


Click to see tips when cursor is over a feature

Hint: The sequence groups should be sets of sequences which are of the same genotype, serotype etc and have a higher homology within the group than outside of the group
Please click here to e-mail the author with any queries you have about the software