
| Allele | Initial PCR product size (bp) | GenBank accession no. of reference sequence | Target region included for allele asignment* | Size of target region (nt) |
| flaA | 245 | X83232 | 653-834 | 182 |
| pilE | 459 | AF048690 | 103-435 | 333 |
| asd | 575 | AF034213 | 538-1010 | 473 |
| mip | 558 | AJ496269 | 117-518 | 402 |
| mompS | 648 | AF078136 | 523-874 | 352 |
| proA | 480 | M32884 | 1134-1538 | 405 |
| neuA | 459 | AJ007311 | 229-582 | 354 |