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Strain Groups
Bacillus anthracis (
18
)
Bacillus cereus (
700
)
Burkholderia pseudomallei (
164
)
Campylobacter jejuni (
137
)
Chlamydophila pneumoniae (
4
)
Clostridium perfringens (
553
)
Escherichia coli (
455
)
Francisella tularensis (
66
)
Haemophilus influenzae (
882
)
Legionella pneumophila (
806
)
Mycobacterium tuberculosis (
28
)
Mycoplasma hyopneumoniae (
221
)
Neisseria meningitidis (
539
)
Salmonella enterica (
744
)
Shigella flexneri (
113
)
Staphylococcus aureus (
107
)
Streptococcus agalactiae (
89
)
Streptococcus pyogenes (
102
)
Streptococcus thermophilus (
90
)
Yersinia pestis (
23
)
FAQ
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Variable Region Finder
Variable Regions from Haemophilus influenzae
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Percentage ID Cutoff:
Position in strain
Haemophilus influenzae 86028NP
Percentage
Identity
Maximum
Length
1878958-1879692
45.38
1830
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
365741-366010
45.22
820
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1550801-1551241
45.12
1151
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
184501-184731
44.4
761
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
84884-85400
44.27
1382
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
84884-85400
44.27
1382
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1878994-1879692
43.58
1794
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
721736-722619
42.93
962
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
762119-762965
42.78
2174
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1878994-1879759
42.31
1961
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
762119-762918
41.88
2127
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1871886-1873409
40.21
1523
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
859193-859544
38.35
1172
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1798007-1798240
38.26
842
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1263551-1264000
38.12
1361
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1600879-1603169
34.99
2290
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1734801-1735626
32.57
2791
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1171445-1171808
28.02
1792
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
542292-546633
27.42
4341
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
542292-542993
24.08
3330
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1088651-1089300
23.73
3084
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1385603-1385889
21.94
3290
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
509914-510115
19.23
2057
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
780454-784050
17.87
3596
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
650980-653900
12.85
2920
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
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