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Strain Groups
Bacillus anthracis (
18
)
Bacillus cereus (
700
)
Burkholderia pseudomallei (
164
)
Campylobacter jejuni (
137
)
Chlamydophila pneumoniae (
4
)
Clostridium perfringens (
553
)
Escherichia coli (
455
)
Francisella tularensis (
66
)
Haemophilus influenzae (
882
)
Legionella pneumophila (
806
)
Mycobacterium tuberculosis (
28
)
Mycoplasma hyopneumoniae (
221
)
Neisseria meningitidis (
539
)
Salmonella enterica (
744
)
Shigella flexneri (
113
)
Staphylococcus aureus (
107
)
Streptococcus agalactiae (
89
)
Streptococcus pyogenes (
102
)
Streptococcus thermophilus (
90
)
Yersinia pestis (
23
)
FAQ
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Variable Region Finder
Variable Regions from Legionella pneumophila
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
Percentage ID Cutoff:
Position in strain
Legionella pneumophila Corby
Percentage
Identity
Maximum
Length
1050777-1050928
85.44
211
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1051072-1051278
79.26
301
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1052377-1052528
81.04
241
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1053522-1053828
84.73
380
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1055541-1055690
74.78
251
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1059121-1059840
84.61
852
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1063156-1063615
89.22
578
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1067718-1067904
78.09
301
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1069663-1069917
86.71
318
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1071607-1071758
86.32
201
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1077451-1077550
73.7
201
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1078312-1078463
85.71
201
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1086274-1086425
86.57
201
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1086751-1086858
73.06
210
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1090686-1091035
89.57
369
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1093051-1093319
81.15
372
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1093522-1093785
74.74
413
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1094272-1094535
80.57
365
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1095722-1095919
84.33
265
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1096218-1096419
89.89
216
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1097618-1097821
88.35
237
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1099422-1099521
72.64
201
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1099989-1100863
ND
14211
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1102039-1102200
75.27
263
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
1102653-1102804
88.46
189
Strain Position
Max length and direction
Features
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
Alternative positions
Direction and length
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